OK guys, not being a porting guru, but knowing more than a little bit about it, let me attempt to explain. Also, what I can't explain can be gleaned from hours of reading here:
http://www.macdizzy.com/cyl_primer.htm Make yourselves smart here, then you can answer the questions...
If you look at the main transfer ports, it's obvious that they are presenting the fresh fuel-air mixture towards the TOP REAR area of the cylinder, opposite the exhaust port. This is called LOOP CHARGING. The fresh fuel air mixture loops towards the top rear to SCAVENGE the spent exhaust gasses from that area first, then continues to loop around the cylinder, hopefully getting rid of as much of the spent gas as possible. Then, hopefully, the piston will close off the exhaust port BEFORE any of the fresh fuel-air mixture exits out the exhaust. But this is the real world. Thank GOD for tuned expansion chambers. The rear boost port or ports continue and enhance this scavenging process, but we don't want to totally DISRUPT this process.
The first thing that has to happen, is that there has to be enough BLOWDOWN time to let the transfer process happen. Blowdown time is the time it takes for cylinder pressure to decrease enough after the engine fires to let transfer take place. Raising the exhaust port, thus opening it sooner increases it's open time and decreases blowdown time. Widening it decreases blowdown time. Get the bad out and the good in as fast as possible. A taller exhaust also decreases the corrected compression ratio, so you have to give in order to get. Once the transfer process starts happening, you want it to be INITIATED by the MAIN TRANSFERS in order to get the loop started towards the top rear of the cylinder. If the boost port or ports open first, then they will be working AGAINST the main transfers, and if their roof angle is too straight they will be trying their darndest to force all of that nice fresh fuel air mixture STRAIGHT OUT THE EXHAUST! (That's what they are facing, remember?) They (it) should open just slightly AFTER the main transfers, and they should have a fairly steep (40-60deg.) roof angle to pretty much blow straight up at the combustion chaimber. They are boosters, and their job is to enhance scavenging, not counteract it.
ScooterWiz