The first one is better. You must not change the angle to point too much upwards. A and B transfers should point around 20 degrees up. Actually race cylinders have it so that A port has more upward angle(20deg) and B port less (5-10deg). This is of course very hard to measure. Just form the epoxy so that they point "slightly" up 😀
Edit, I think the 40mm cyl is actually better. Even though 44mm has more capacity, the advantage will be nullified from less port area relative to capacity (bore to stroke ratio gets worse) and also the transfer ducts get even smaller on the 44mm cyld.
Edit, I think the 40mm cyl is actually better. Even though 44mm has more capacity, the advantage will be nullified from less port area relative to capacity (bore to stroke ratio gets worse) and also the transfer ducts get even smaller on the 44mm cyld.